Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015825826.1_cds_XP_016502468.1_16106
CDS Infomation

[gene=LOC107820659] [db_xref=GeneID:107820659] [protein=pentatricopeptide repeat-containing protein At1g28690, mitochondrial-like] [protein_id=XP_016502468.1] [location=7417..9000] [gbkey=CDS]
Sequence

ATGATAAATGCCAAAATACCCAAATTCAAATCTTTGGTCCCGTTAAAAGAAACAGAAATT
AACCACCTTTTATGGCCGCCAAAATTTTCTTCACTACCGTTAGCTCTACAACACTATATC
AATTCCGACACTCCTATACACGGCCAAAAGATCCATTCATACATTTTCAAAACTGGGTAC
AAACCCAATACCAATATATGCATCAAGCTTATAATACTTCATTTAAAATCTTCTTGCCTT
TTCTATGCGCGCCAATTGTTCGACGAAATGCGTCAACCGACTCTCTCGGCTTATAATTAC
ATGATTTCAGGCTATGTAAAACATGGGTTTGTCTTAGAGTCTTTTGATATGGTTAAAAAG
TTGTGTCTTTCTGGTGAAACTCCAGATGCGTATACATTGTCAATGATCTTGAAAGGCTCC
ACTAGTAGCTATGCCGAGTCATATTCTCCTTATATTGGAAAACAGGTTCATGCCCAGATA
TTTAAATGCGTCATTGAAGGTGATGATGTGCTGTATACGGCGTTAGTTGACTCGTATGTG
AAGAGCGGGAGGGTGGACTATGCGAGGAGAGTGTTTGATTTGATGTTGGAAAAGGATGTA
GTTTGCTCGACGTCGTTGATAACAGGGTACATGAATCAGTGTTATATTGAGGATGCTGAA
GATGTGTTTAGTAGAACGACAGAGAAAGATGTTGTGGTGTTCAATGCAATGATTGAAGGT
TATAGCAAACAAGTTGAAAATGCTAAGAAGGCGATTGAGGTTTACATTGACATGCAACGT
TTGGGTTTTAGGCCGAATATTTCTACTTTTGCAAGCATTATTGGGGCTTGTTCTGCTCTA
GCAGAATTTGAAATTGGTCAACAAGTTCAAGGGCAGCTCATGAAGACTGAGTTAATTGAG
CATGTAAAAATTGGAAGTGCTTTAATTGACATGTATTCTAAGTGTGGGTTGGTTGAGGAT
GCAAGAAGAGTCTTTAACTACATGCCTGAGAAGAATGTTTTCTCATGGACTTCCATGATT
GACGGATACGGGAAAAATGGGTATCCTAATGAGGCACTTGAACTATTTAGTGTAATGCAA
ATAGATCATCTCATTGTTCCAAACTATGTTACATTTCTAAGTGCTCTCTCTGCATGTGCG
CATTCTGGGCTAGTTGCTAAAGGAAGAGAGATTTTTGAAAGCATGGAGAGAGATTACTCT
ATGAAGCCGAGGATGGAGCATTATGCTTGCATGGTTGATATCTTGGGCCGCTCAGGGAGC
TTAAATCAGGCCTTAGAGTTTGTAATTAATATGACTGAAAGGCCAGATTCTGATGTTTGG
GCAGCTTTACTCAGTTCTTGTAGACTGCATGGAGATGTGGAATTGGCTAATTTAGCTGCC
AATGAACTTTTCAAGCTGAGTAGTGGTAGTCGTCCAGGGGCATATGTTGCCCTATCTAAT
GCTCTGGCAGATGCTGGGAGATGGGACGGTGTAAGTGAACTTAGGGAGATTATGAAGATT
AGAGGAATATCAAAAGGTACAGGCTTCAGTTGGGTTGGCGGTGATAGCAGCTTGAAAGCT
TTCTTCGCAGAACAACATATTTAA

Peptide Sequence

PEP ID

XP_016502468.1
PEP Infomation

PREDICTED: pentatricopeptide repeat-containing protein At1g28690, mitochondrial-like [Nicotiana tabacum]
Sequence

MINAKIPKFKSLVPLKETEINHLLWPPKFSSLPLALQHYINSDTPIHGQKIHSYIFKTGY
KPNTNICIKLIILHLKSSCLFYARQLFDEMRQPTLSAYNYMISGYVKHGFVLESFDMVKK
LCLSGETPDAYTLSMILKGSTSSYAESYSPYIGKQVHAQIFKCVIEGDDVLYTALVDSYV
KSGRVDYARRVFDLMLEKDVVCSTSLITGYMNQCYIEDAEDVFSRTTEKDVVVFNAMIEG
YSKQVENAKKAIEVYIDMQRLGFRPNISTFASIIGACSALAEFEIGQQVQGQLMKTELIE
HVKIGSALIDMYSKCGLVEDARRVFNYMPEKNVFSWTSMIDGYGKNGYPNEALELFSVMQ
IDHLIVPNYVTFLSALSACAHSGLVAKGREIFESMERDYSMKPRMEHYACMVDILGRSGS
LNQALEFVINMTERPDSDVWAALLSSCRLHGDVELANLAANELFKLSSGSRPGAYVALSN
ALADAGRWDGVSELREIMKIRGISKGTGFSWVGGDSSLKAFFAEQHI

Transcript Sequence

Gene sequence data has not been registered.